PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT12583
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family NAC
Protein Properties Length: 182aa    MW: 19824.4 Da    PI: 6.1236
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT12583genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM91.91.1e-2828054129
       NAM  54 eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk...kgelvglkktLvfykgrapkgektdWvmheyrle 129
               +ekew+fF+++ +ky+tg+r+nrat++gyWkatgkdke+++    +  lvg+kktLvfy+grap+g +t  vmheyrle
  EMT12583   2 GEKEWFFFVHKGRKYPTGTRTNRATEKGYWKATGKDKEIFRGkgrDAVLVGMKKTLVFYTGRAPSGGETPGVMHEYRLE 80 
               579*************************************984444445****************************85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100535.261103IPR003441NAC domain
SuperFamilySSF1019413.53E-322103IPR003441NAC domain
PfamPF023653.3E-12679IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MGEKEWFFFV HKGRKYPTGT RTNRATEKGY WKATGKDKEI FRGKGRDAVL VGMKKTLVFY  60
TGRAPSGGET PGVMHEYRLE GELPHRHRLT AKDDWAVCRV INKDLAARNA LQMAPAAGGG  120
MEDPLAFLDD VLNNDDLLNN AELLDNAGLL DNADLPMLMD SPSGADDFAG ASTSPSSAAL  180
PL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4dul_B2e-28110968171NAC domain-containing protein 19
4dul_A2e-28110968171NAC domain-containing protein 19
1ut7_B2e-28110968171NO APICAL MERISTEM PROTEIN
1ut7_A2e-28110968171NO APICAL MERISTEM PROTEIN
1ut4_B2e-28110968171NO APICAL MERISTEM PROTEIN
1ut4_A2e-28110968171NO APICAL MERISTEM PROTEIN
3swp_D2e-28110971174NAC domain-containing protein 19
3swp_C2e-28110971174NAC domain-containing protein 19
3swp_B2e-28110971174NAC domain-containing protein 19
3swp_A2e-28110971174NAC domain-containing protein 19
3swm_D2e-28110971174NAC domain-containing protein 19
3swm_C2e-28110971174NAC domain-containing protein 19
3swm_B2e-28110971174NAC domain-containing protein 19
3swm_A2e-28110971174NAC domain-containing protein 19
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ0108301e-175AJ010830.1 Triticum sp. mRNA for GRAB2 protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002461233.18e-64hypothetical protein SORBIDRAFT_02g043270
SwissprotQ9FKA02e-44NAC92_ARATH; NAC domain-containing protein 92
TrEMBLM8CBU71e-132M8CBU7_AEGTA; Protein CUP-SHAPED COTYLEDON 3
STRINGMLOC_65714.14e-86(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP4938822
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04060.12e-43NAC domain containing protein 46